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Welcome To Dariusz Plewczynski Home Page

My Papers

indexed by PubMed indexed by myself

My WorkPlaces

assistant professor

Bioinformatics, Mathematical modelling of biological systems PostDoc & research associate

BioInformatics PhD Degree

Physical Chemistry of Diffusion MSc Degree

Physics MSc Degree

Topological Phase Transitions in Thin Magnetic Films

BioInformatics Papers

1) Authors: Dariusz Plewczynski, Marcin von Grotthuss, Stephane Spieser, Leszek Rychewski, Lucjan S. Wyrwicz, Uwe Koch Submitted to CCHTS (2006);

2) Authors: A. Tkacz, L. Rychlewski, P. Uva, D. Plewczynski PubMed: "Microarray-based classification of genes and biological samples. Supervised classification of genes and biological samples" (PDF) In press as a chapter in the book on Microarray Data Analysis (2006);

3) Authors: Liisa Holm, Sakari Kääriäinen, Dariusz Plewczynski, Chris Wilton PubMed: "DALI - structural comparison of proteins" (PDF) In press: Current Protocols in Bioinformatics (2006);

4) Authors: D. Plewczynski, S. Spieser, U. Koch PubMed "Assessing Different Classification Methods for Virtual Screening" (PDF) J. Chem. Inf. Model. 46(3), p.1098-106 (2006);

5) Authors: M. von Grotthuss, D. Plewczynski, K. Ginalski, L. Rychlewski4, and E.I. Shakhnovich PubMed "PDB UF: database of predicted enzymatic functions for unannotated protein structures from Structural Genomics" (PDF) BMC Bioinformatics 6(7), p. 53 (2005);

6) Authors: D. Plewczynski, A. Tkacz, L. Wyrwicz, A. Godzik, A. Kloczkowski and L. Rychlewski PubMed "Support Vector Machine Classification of Linear Functional Motifs in Proteins" (PDF) Journal of Molecular Modelling 12(4), p. 453-61 (2006);

7) Authors: D. Plewczynski, L. Jaroszewski, A. Godzik, A. Kloczkowski and L. Rychlewski PubMed "Molecular Modelling of Phosphorylation Sites in Proteins using Database of Local Structure Segments" (PDF) Journal of Molecular Modelling 11(6), p. 431-438 (2005);

8) Authors: D. Plewczynski, A. Tkacz, L. Wyrwicz and L. Rychlewski PubMed "AutoMotif Server: prediction of single residue post-translational modifications in proteins" (PDF) Bioinformatics 21(10), p.2525-7 (2005);

9) Authors: D. Plewczynski, A. Tkacz, A. Godzik and L. Rychlewski PubMed "A support vector machine approach to the identification of phosphorylation sites" (PDF) Cellular & Molecular Biology Letters 10 (1): 73-89 (2005);

10) Authors: D. Plewczynski, L. Rychlewski, L. Jaroszewski, Y. Ye, A. Godzik PubMed "Integrated web service for improving alignment quality based on segments comparison" (PDF) BMC Bioinformatics 5(1):98 (2004);

11) Authors: D. Plewczynski, J. Pas, M. von Grotthuss and L. Rychlewski PubMed "The Tool for Comparison of Proteins Based on the Segment Structural Similarity" (PDF) Acta Biochimica Polonica 51(1), p. 161-172 (2004);

12) Authors: D. Plewczynski, L. Rychlewski PubInternet "Ab Initio Server Prototype for Prediction of Phosphorylation Sites in Proteins" (PDF) Computational Methods in Science and Technology CMST vol 9(1-2), p. 93-100 (2003);

13) Authors: D. Plewczynski, J. Pas, M. von Grotthuss, L. Rychlewski PubMed "3D-Hit: fast structural comparison of proteins" (PDF) Applied Bioinformatics 1, p. 223-225 (2002);

Nonlinear Data Analysis Paper S. Redaelli, D. Plewczyński, W. Macek Phys. Rev. E 66 , 035202(R) (2002); "Influence of Colored Noise on Chaotic System" (PDF) PubMed

PhD Thesis D. Plewczyński Diffusion on Curved Surfaces (2001): "PhD Thesis in polish (PDF)"

Physics of Diffusion Papers 1) R. Hołyst, D. Plewczyński, A. Aksimientiev, K. Burdzy Phys. Rev. E 60, 302 (1999): PubMed "Diffusion on Curved, Periodic Surfaces" (PDF version) 2) D. Plewczyński, R. Hołyst J. Chem. Phys. 22, 9920 (2000): PubMed "Reorientational angle distribution and diffusion coefficient for nodal and cylindrical surfaces" (PDF version) PubMed 3) D. Plewczyński, R. Hołyst Physica A 295, p. 371-378 (2001): "Approach to equilibrium of particles diffusing on curved surfaces" (PDF version) PubMed

SocioPhysics Paper D. Plewczyński Landau Theory of Social Clustering Physica A 261, 608 (1998): "Landau Theory of Social Clustering" (PDF) PubMed

MSc Thesis Source D. Plewczyński Topological Phase Transitions in Thin Magnetic Films (1995): "MSc Thesis in polish (tex file)"

Polish Scientific Discusion Club Lectures Law of Discusion Club Island Branch of The Scientific Discusion Club

Interesting Science Links Physics, Chemistry Links etc.

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[ Last updated 16.08.2006 ]

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